Basic Information
VIS ID
TVIS10018738
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37.55
Start
7678463/7678463 (Hg38)
End
7678463/7678463 (Hg38)
Nearest miRNA
hsa-mir-101-2/Upstream/1670559; hsa-let-7a-1/Downstream/10894843;
Nearest TSS
ENST00000422679/Upstream/550556; ENST00000430766/Downstream/108225;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/919591, chr9-CpG: 43/Downstream/120892
Nearby gene
DMAC1
Upstream sequence
CAAGATATAAAACATAGCTGAATTTGTGAGATGGCTTTGGTGCTCCCTTCTCCCCACTGTAAGTCTTTGACTTCTTTAATGAAATAGGGCCAGAGTGCTC
Downstream sequence
actAGTCATGAAGTAGCAtgtcaatttgactgttggaaattggtagctgaatgtggttttaatttacatttcattgatcaatgaagttgaacattttcct
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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