Basic Information
VIS ID
TVIS10018744
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1369
End
1691
Integrated sequence
GTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTG
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37.55
Start
81194993/83247224 (Hg38)
End
81195020/83247251 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/578917;
Nearest TSS
ENST00000595228/Upstream/19503;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/29744, None/Downstream
Nearby gene
RPL23AP87
Upstream sequence
CGTATTACAGGTTTCGTGGTTGCAAGAAGTTACGTAATTTAAGTTTACTGGCATTGCTACCCACCTAAGTCTAAAACTAAATCTAATGCTCCCATTTGCA
Downstream sequence
gggttagggttaggttagggtgagggtgagggtgagggtgagggtgagggtgagggtgagggtttagggttggggttggggttggggttggggttggggt
Target sequence
ttagggttagggttagggttagggtta
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate