Basic Information
VIS ID
TVIS10018745
Fusion event
HBV-LOC105376872 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1790
Integrated sequence
ACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGC| |ATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGG
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37.55
Start
68192912/70525676 (Hg38)
End
68192912/70525676 (Hg38)
Location type
Intronic
Target gene
LOC105376872
Nearest miRNA
hsa-mir-1-2/Upstream/3443990; hsa-mir-548av/Downstream/2327645;
Nearest TSS
ENST00000575820/Upstream/141085; ENST00000563639/Downstream/125068;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/94816, chr18-CpG: 225/Downstream/2016063
Nearby gene
GTSCR1
Upstream sequence
TGAGTGTGGCATCCTCCCTCCACCTCGCCCACCTCTGAGTCCCGCCATAACCTACCCGGAACCTACCAGAACCTAGCATCACTGCACGCCACCGCGGCCC
Downstream sequence
tatggtagaatgatttatattcctctgggtatatacccagttttgggattctcgggttgagtggttgctctgcttttaggtctttgaggaatcaccatgc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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