VISDB Viral Integration Site DataBase

VIS ID

TVIS10018747

Fusion event

HBV-BAZ2A integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

480

End

579

Integrated sequence

CTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAAC

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

57008797/56615013 (Hg38)

Location type

Exon27

Target gene

miRNAs that regulate target gene

hsa-mir-1180-3p ; hsa-mir-877-3p ; hsa-mir-671-5p ; hsa-mir-425-5p ; hsa-mir-484 ; hsa-mir-328-3p ; hsa-mir-27b-3p ; hsa-mir-93-5p ; hsa-mir-23a-3p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4755-3p ; hsa-mir-485-5p ; hsa-mir-3188 ; hsa-mir-3975 ; hsa-mir-2467-5p ; hsa-mir-6884-5p ; hsa-mir-3915 ; hsa-mir-486-3p ; hsa-mir-874-5p ; hsa-mir-3928-3p ; hsa-mir-4699-5p ; hsa-mir-6805-5p ; hsa-mir-5680 ; hsa-mir-451b ; hsa-mir-548e-5p ; hsa-mir-449a ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-449b-5p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-3144-3p ; hsa-mir-4668-5p ; hsa-mir-625-5p ; hsa-mir-3148 ; hsa-mir-6798-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6783-5p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-3157-5p ; hsa-mir-4423-3p ; hsa-mir-4722-5p ; hsa-mir-4691-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-512-5p ; hsa-mir-4304 ; hsa-mir-4253 ; hsa-mir-6079 ; hsa-mir-4669 ; hsa-mir-198 ; hsa-mir-4634 ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-6828-5p ; hsa-mir-4783-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-3918 ; hsa-mir-7113-5p ; hsa-mir-7160-3p ; hsa-mir-4802-3p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-6873-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-7162-3p ; hsa-mir-4649-3p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-6730-3p ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-8485 ; hsa-mir-193a-3p ; hsa-mir-193b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/2277699; hsa-let-7i/Downstream/579491;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/126095, chr12-CpG: 55/Downstream/14828

Upstream sequence

TCTCCCAAGTGTATCACATGATATGATGTGTGCAGGTGTCAGATGATGCTGAGATGGCCGACAGAGCTCAATTCAGAAACAAGTGATGAGCTCCTTAACA

Downstream sequence

TACTCCACTTCTCTTCAAGATTCAGTTCATCATTGTACCCTAACAACCTCCACCCTCTCTCTTCTACGCTGCCTCTTGCTGGCCAAATCCAACAACCATA