Basic Information
VIS ID
TVIS10018762
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
End
69651259/69836491 (Hg38)
Fragile sites / regions
Nearest miRNA
hsa-mir-10392/Upstream/753229; hsa-let-7a-2/Downstream/447464;
Nearby gene
Nearest cancer related gene
FGF3(OG, No orient)
Upstream sequence
ataatcaaatcaccctccaccaggttcctcccatgacactgggaattgtgggagttacaattcaagatgatttgggtggcaacacagacaaaccatatca
Downstream sequence
acagagGCCCTGCTGTCAGCCGCTAGCACAGGCAGCTCGGCTATATGAGAAGGGACGAGGATCCCCTTCCACAGATGGGGACAATGAATCACTGGGGGCT
Target sequence
aggc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate