Basic Information
VIS ID
TVIS10018765
Fusion event
HBV-LOC105371954 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1536
Integrated sequence
TCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTC| |TTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAA
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37.55
Start
1388657/1388656 (Hg38)
End
1388657/1388656 (Hg38)
Location type
Intronic
Target gene
LOC105371954
Nearest miRNA
hsa-mir-8078/Upstream/1276317; hsa-mir-1-2/Downstream/2496697;
Nearest TSS
ENST00000575820/Upstream/29006; ENST00000583163/Downstream/3529;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/479083, chr18-CpG: 33/Downstream/1182631
Nearby gene
LINC00470
Upstream sequence
attttcttgatccagtctgtcattgatgggcatttaggttgattccatgtctttgctattgtgaatagtgctgcaatgaacatacatgtgcatgtgtctt
Downstream sequence
ttttttaaaagaggacatacatgaggccaacaattgtatgaaaaaggctcaacatcattattagagaaatggaagtcaaaaccccaatgagaaccatctc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate