Basic Information
VIS ID
TVIS10018766
Fusion event
HBV-LOC105371954 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
458
Integrated sequence
CTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCA| |AGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTAT
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37.55
Start
1389961/1389960 (Hg38)
End
1389963/1389962 (Hg38)
Location type
Intronic
Target gene
LOC105371954
Nearest miRNA
hsa-mir-8078/Upstream/1277621; hsa-mir-1-2/Downstream/2495391;
Nearest TSS
ENST00000575820/Upstream/30310; ENST00000583163/Downstream/2223;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/480387, chr18-CpG: 33/Downstream/1181325
Nearby gene
LINC00470
Upstream sequence
ctgacaaagatctaatatctcacatctataaggaacttaaacaaatttgcaagaaaaaaacaaccccattaaaaagtgggcaaaagccatgaacagacat
Downstream sequence
GAAGTGAAGCTACCATCTTGTGAATAAGAGGACCAAGAAGATGTTGAGGCTTGGATGGTGCTAAGAATAGCAGAGAAGAAGGGTGAAAAGTTCTGGGTAA
Target sequence
AG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate