AGBL4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018768
Fusion event
HBV-AGBL4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1725
Integrated sequence
ACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTT| |TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37.55
Start
49690867/49225195 (Hg38)
End
49690867/49225195 (Hg38)
Location type
Intron10
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4679643; hsa-mir-101-1/Downstream/1834642;
Nearest TSS
ENST00000473358/Upstream/179481; ENST00000420071/Downstream/32216;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/325954, chr1-CpG: 34/Downstream/798550
Upstream sequence
TAGGGCTCAGAGAACTTCAGCGTTAGGGCCTTGGGGAGTCTATGTCAGACTTGAGGACCAAGCCTGGGCTCACAAATGACAACTAGGCTACTATTTTTAC
Downstream sequence
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaacacagagagagagggagggagggaggaaggaaggaaggaaggaaggaagga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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