VISDB Viral Integration Site DataBase

VIS ID

TVIS10018769

Fusion event

HBV-SERBP1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

458

Integrated sequence

CTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCA| |AGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTAT

Chromosome

chr1

Cytoband

p31.3

Reference genome

Start

End

67891969/67426286 (Hg38)

Location type

Intron7

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-10a-5p ; hsa-mir-16-5p ; hsa-mir-93-3p ; hsa-mir-652-3p ; hsa-mir-625-5p ; hsa-mir-615-3p ; hsa-mir-505-3p ; hsa-mir-328-3p ; hsa-mir-374a-5p ; hsa-mir-30b-5p ; hsa-mir-15b-5p ; hsa-mir-100-5p ; hsa-mir-27a-3p ; hsa-mir-18a-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-8485 ; hsa-mir-548n ; hsa-mir-4699-3p ; hsa-mir-6509-5p ; hsa-mir-6732-3p ; hsa-mir-450b-5p ; hsa-mir-6750-3p ; hsa-mir-6512-5p ; hsa-mir-433-3p ; hsa-mir-7154-5p ; hsa-mir-4443 ; hsa-mir-1273e ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6134 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-219b-3p ; hsa-mir-1247-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-2054 ; hsa-mir-302f ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4799-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-651-5p ; hsa-mir-4715-3p ; hsa-mir-885-5p ; hsa-mir-22-3p ; hsa-mir-6802-5p ; hsa-mir-6800-5p ; hsa-mir-4645-3p ; hsa-mir-4790-3p ; hsa-mir-622 ; hsa-mir-3177-5p ; hsa-mir-5093 ; hsa-mir-875-3p ; hsa-mir-4308 ; hsa-mir-511-3p ; hsa-mir-504-5p ; hsa-mir-1257 ; hsa-mir-8060 ; hsa-mir-664a-3p ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-548l ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-589-5p ; hsa-mir-4501 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-513a-5p ; hsa-mir-4733-3p ; hsa-mir-370-5p ; hsa-mir-4764-3p ; hsa-mir-510-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4462 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-211-3p ; hsa-mir-7845-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-101-1/Upstream/797769; hsa-mir-11399/Downstream/757232;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/291254, chr1-CpG: 139/Downstream/3166

Upstream sequence

tgcggcaaaccaccatgcacacatttacctatgtaacaaacctgcacgtcctgcacatgtatcctggaacttaaaataaaattttttttaaaaaaaaGAA

Downstream sequence

TACCTTTGTAATTTTGCAAATGCAACAAGTTATTGGTTTCTATTCGAGTGGAGCTGTCACTGAATGCATTTTAAAACTACACACACATTTTGTGTACTAT