GTF3C2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018771
Fusion event
HBV-GTF3C2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1773
Integrated sequence
TCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGT| |ACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCT
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37.55
Start
27553969/27331102 (Hg38)
End
27553969/27331102 (Hg38)
Location type
Intron7
Target gene
GTF3C2
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-10a-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1301/Upstream/2002381; hsa-mir-10b/Downstream/665265;
Nearest TSS
ENST00000437798/Upstream/1642; ENST00000608473/Downstream/4326;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/22505, chr2-CpG: 74/Downstream/25327
Upstream sequence
cacccagtttgaaggcccctatagaggaatggaatccgcaagagaatacagtttcttcatccccctgtcccgacaccaccctgcactcttccaccaatca
Downstream sequence
ataattcagcaattggaggggagactaagataaatggactggtagaggcactcaatcaagtttaggaattaagaaagcagaacagcatcgagaatcatgt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate