hsa-mir-3944-5p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018778
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1755
Integrated sequence
ATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGAT| |TAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCAT
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
End
100063131/99141980 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/144520; hsa-mir-1243/Downstream/2098815;
Upstream sequence
aatgcccaaatatggagtcagcctggaagaagtccaagtaggttgggaatacctgagacttgtggctggcatctgaaatggaggcagtcctgtgggactg
Downstream sequence
GAAGTTGAGGTAATACACCTTTTACAGTTGAGAGAACAATATCAAATCAAGGATTGTCTGAATTAATTACCAATGTATACCTATATTCTTCTTTAAGGTT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate