Basic Information
VIS ID
TVIS10018781
Fusion event
HBV-ZSCAN31 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2040
Integrated sequence
GGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAG| |CATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAG
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37.55
Start
28302850/28335073 (Hg38)
End
28302850/28335073 (Hg38)
Location type
Intron3
Target gene
ZSCAN31
Nearest miRNA
hsa-mir-3143/Upstream/1187385; hsa-mir-10398/Downstream/2249259;
Nearest TSS
ENST00000381078/Upstream/8356; ENST00000341464/Downstream/378;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/53282, chr6-CpG: 25/Downstream/48272
Upstream sequence
ctgttccctgcgttgggagaacactgtttgcccaagcttacatcaaacacttagaaaactttagcaaaaattaaccacaaagcaggcaagtcagcaattt
Downstream sequence
TCGCCGCAAAGCTCCGACCTCTCTAGGGGTCTCTCCCACCACCCTGtgaaagggctacctagcttgccttaggtggatagcaagggaagggtccctggag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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