Basic Information
VIS ID
TVIS10018782
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr6
Cytoband
q16.2
Reference genome
GRCh37.55
Start
99549391/99101515 (Hg38)
End
99549391/99101515 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/1076894; hsa-mir-1202/Downstream/23094;
Nearest TSS
ENST00000381078/Upstream/153509; ENST00000418945/Downstream/182697;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/153422, chr6-CpG: 99/Downstream/247817
Nearby gene
FAXC
Upstream sequence
GTCATAATTCTCAGAGGCTACCGTACTGTTTTTGTCATAAATTGCTTCATGCTTCTTTTTTTTCAGTAATTGTTAAGCTTGATTTCTTTTATTTTAATTT
Downstream sequence
cagtgtgttctgactgggaatcaTTgttgtcaacaaagcctgataagatctaaccctgccccatgatggatgtgcttaccacatccatcactcactttgc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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