Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018783
Fusion event
HBV-FSD1L integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2063
Integrated sequence
CTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGC| |ACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGT
Host Sequence
Chromosome
chr9
Cytoband
q31.2
Reference genome
End
108287939/105525658 (Hg38)
Location type
Intron10
Target gene
miRNAs that regulate target gene
hsa-mir-4786-3p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-4668-3p ; hsa-mir-1305 ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4495 ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-130a-5p ; hsa-mir-136-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-3145-5p ; hsa-mir-508-5p
Nearest miRNA
hsa-let-7a-1/Upstream/7296441; hsa-mir-12126/Downstream/1075270;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/77186, chr9-CpG: 31/Downstream/32306
Upstream sequence
GAAAGCACAGGAAGGAGACCCAGAAGCTAGGTAATACAGATTTATTCTCCTCTGAATGTCCTGGGGATTTCATTTCTGACCACAGTTGCTTTCAATAGCA
Downstream sequence
TCTGGAAAAGAGTGTGCGAGAGTTGTGCACAGAACCATGGGTGGCTCAGATGGATGCATGACCAAGACAGTTGGGGGTGCAGACATGCTGTGCAGACCTC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.