Basic Information
VIS ID
TVIS10018786
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1690
End
1789
Integrated sequence
ACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGC
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
End
85125780/84732001 (Hg38)
Fragile sites / regions
Nearest miRNA
hsa-let-7i/Upstream/3573540; hsa-mir-1178/Downstream/2013067;
Nearby gene
Upstream sequence
TTTAAAGGACTAATTTCCCCATAGATAAAGAGCAGTGACACGTGCTCTATTTTATGCCCTCTTCCTTCCAAACAGGGCCAGGATAAGATACACAGTCACC
Downstream sequence
AAGGACCAGATCCCACGCTCCCACTATCCTGGGCAGACCTGGCCCTCCTTAGGGGCTGGCTCCTCCTGTCGGCCGCAGTCTCAGCCTTGCGCTCACATGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate