Basic Information
VIS ID
TVIS10018790
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1823
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
End
24032150/22659830 (Hg38)
Nearest miRNA
hsa-let-7c/Upstream/3973666; hsa-mir-155/Downstream/419454;
Nearby gene
Upstream sequence
AGCTGCATGAATTTACTTAGTTGACTTGCCTTGGGAGGATAAATCCCCTGATAAAATGGGGCATATGGGGTGAACATTTAATTGGGATTGAGGTGATTTA
Downstream sequence
AGGACAGTAGACCCAGGTAAAAATATATTAAAGAATTAGCCATGTTCATACACAAATACAAATGAAAACGTCCTCTTTGGCTGGCTTTATAGTGAGAGAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate