Basic Information
VIS ID
TVIS10018791
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37.55
Start
144731852/145013010 (Hg38)
End
144731852/145013010 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/10575104; hsa-mir-1224/Downstream/6552866;
Nearest TSS
ENST00000440867/Upstream/1039402; ENST00000482351/Downstream/926902;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1039573, chr3-CpG: 97/Downstream/1147633
Nearby gene
DIPK2A
Upstream sequence
TTTAACCTagtaaacagttctgcaagttttgattgtaagtgccacacaattcaagatttaaaacattactttcacccataaaaataacactatgtctctg
Downstream sequence
agtagatattgccaaattagttcccaaagtgttttcaccaatttgcattcactagtagtatataatagttacacttgccacataatccttgttttttagt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate