Basic Information
VIS ID
TVIS10018794
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1567
Integrated sequence
GGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCA| |TCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTC
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37.55
Start
34639178/34414111 (Hg38)
End
34639178/34414111 (Hg38)
Nearest miRNA
hsa-mir-1301/Upstream/995547; hsa-mir-10b/Downstream/1057294;
Nearest TSS
ENST00000437798/Upstream/30323; ENST00000607437/Downstream/263444;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/686494, chr2-CpG: 191/Downstream/1941143
Nearby gene
LINC01320
Upstream sequence
GTCGGTATCCTGTTATCTGGGCCCGAGGTGGAGTCCATCTCACCAGGACAGTAGAATCAGTTTCATTGACAAACTGGAGGTTAGTGGGAGCATCCAGTTC
Downstream sequence
TACCAAGAAAAAGTTTCTAAAGCAAACAATAAGACTGTTAGGCATACTGTACATATAGTAGTAATGGGGGGTTTTACCAATGCTTGAAAAAGCAAAAGTA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate