STK32B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018799
Fusion event
HBV-STK32B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1793
Integrated sequence
GACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATA| |AATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGG
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
GRCh37.55
Start
5257521/5255794 (Hg38)
End
5257521/5255794 (Hg38)
Location type
Intron3
Target gene
STK32B
Nearest miRNA
hsa-mir-4800/Upstream/3005638; hsa-mir-12113/Downstream/667481;
Nearest TSS
ENST00000502981/Upstream/41552; ENST00000511959/Downstream/176492;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/203637, chr4-CpG: 18/Downstream/312614
Upstream sequence
TCGTTTCTTGATTTCCATTAGCACAATTAACAGCTGTTCCACCTCAAATGATGAGGATAGTTCCAAACTATTCAATAGATTTAATGAAAAAAATCATTAT
Downstream sequence
atatgaatatactctatttaatcattctactgctgttggacaatggggttggtttaattgggggattctatgaataaagctgctgtgcacattcttatcc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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