Basic Information
VIS ID
TVIS10018804
Fusion event
HBV-LOC102723654 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1804
Integrated sequence
ATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37.55
Start
128469377/129133684 (Hg38)
End
128469377/129133684 (Hg38)
Location type
Intronic
Target gene
LOC102723654
Nearest miRNA
hsa-mir-10397/Upstream/35918; hsa-mir-103a-1/Downstream/263378;
Nearest TSS
ENST00000502646/Upstream/38933; ENST00000505791/Downstream/326581;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/38315, chr5-CpG: 165/Downstream/326126
Nearby gene
MIR4633
Upstream sequence
ACAATTTTTAAAAAGGTTTATGCAATTCTGAAGCAGATTAGGCACTATCTGGGAACTTGTAAAATCAGGAATGGAAAATCTTGGTTTACAATGCTTCCTT
Downstream sequence
AGTCTAATAGATTTAGACTGAATGGAAATGACTAGGTCACCTCTAGCAGTTGTTTTCTTTGAGGGTTTTCCTATTTACTCTTTTCTCAAACTTGAGCAAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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