Basic Information
VIS ID
TVIS10018805
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1790
Integrated sequence
ACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGC| |ATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGG
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37.55
Start
144197579/144818016 (Hg38)
End
144197579/144818016 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/1138045; hsa-mir-103a-1/Downstream/4244297;
Nearest TSS
ENST00000502646/Upstream/612739; ENST00000512571/Downstream/410966;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/219095, chr5-CpG: 43/Downstream/1017070
Nearby gene
KCTD16
Upstream sequence
AAGCAGAAACATTTACTCCATTTCTAAGTATTTTGAGAAGATAATTCTGTTAAAGTTTAAACAATAGTGTTTTTAAAAACCAGGTGAACTTTTTCTCCTT
Downstream sequence
tatgtatgtatatttattaattttaaggaattggtttatgtaattatggatgatgacaagttaaaaatctgtcttatgggccaacgtgttggggacccag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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