Basic Information
VIS ID
TVIS10018807
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr6
Cytoband
q14.2
Reference genome
GRCh37.55
Start
84441627/83731908 (Hg38)
End
84441627/83731908 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/5192599; hsa-mir-1202/Downstream/6580834;
Nearest TSS
ENST00000381078/Upstream/3853; ENST00000635617/Downstream/121358;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/22249, chr6-CpG: 93/Downstream/121193
Nearby gene
RIPPLY2
Upstream sequence
atgctcaataggttaggtctattaaatgggtttttgacttacagtattttcaactcacaatgggtttaacaagacatagatagccccatagtaaattcca
Downstream sequence
gctttgagggagagaggttctagtttctatgactcaagtcataatcaagtctactactgaatttgaaagaggaattttggcttctatgacctgtttctgg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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