Basic Information
VIS ID
TVIS10018808
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1488
End
1626
Integrated sequence
GTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAAC
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
GRCh37.55
Start
138097920/138413175 (Hg38)
End
138097920/138413175 (Hg38)
Nearest miRNA
hsa-mir-10525/Upstream/289354; hsa-mir-10399/Downstream/630925;
Nearest TSS
ENST00000635602/Upstream/249735; ENST00000485318/Downstream/47159;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/410865, chr7-CpG: 146/Downstream/46747
Nearby gene
TRIM24
Nearest cancer related gene
TRIM24(TSG, No orient)
Upstream sequence
TATGGGGAAGTGAGAACTATCAGTTAGGCTCCTAGCTGTTTACCTTTAAGGATAGACAATATTTCTTTTATCTTGTCATCTAGAGGTATATTTTTGAGCA
Downstream sequence
gccaaggcaggcagatcgcctggggtcaggagttcaagaccagcctggccaacacagtgaaaccccgtctctattaaaaatacaaaattagccaggcttg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate