CNTNAP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018809
Fusion event
HBV-CNTNAP2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1717
Integrated sequence
CACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGAC| |TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37.55
Start
145988078/146290986 (Hg38)
End
145988078/146290986 (Hg38)
Location type
Intron1
Target gene
CNTNAP2
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-99b-5p ; hsa-mir-4444 ; hsa-mir-6079 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4428 ; hsa-mir-571 ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u
Nearest miRNA
hsa-mir-10399/Upstream/2908186; hsa-mir-153-2/Downstream/1087031;
Nearest TSS
ENST00000635602/Upstream/173726; ENST00000636600/Downstream/483285;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/173994, chr7-CpG: 33/Downstream/2048416
Nearest cancer related gene
CNTNAP2(TSG, No orient, 0)
Upstream sequence
tggggtttatctcaccccacagtaggatatctcccaaaattcacttgtactcattggtgcaacctgaaaatatggaggaatcaacatcctttggtcactg
Downstream sequence
AACAGAAATTGCAGTAGAGTTCCCTTGCCAACTACAAAATGTTCCATTTCATTCTGCTTTTCTCCATTTCCTAGAATCAGTTACATCAATTTGAATCTAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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