Basic Information
VIS ID
TVIS10018815
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1791
Integrated sequence
CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37.55
Start
104374810/104504082 (Hg38)
End
104374810/104504082 (Hg38)
Nearest miRNA
hsa-mir-10392/Upstream/654102; hsa-let-7a-2/Downstream/6843675;
Nearest TSS
ENST00000527297/Upstream/339703; ENST00000527177/Downstream/105214;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/339752, chr11-CpG: 31/Downstream/1106317
Nearby gene
LINC02552
Upstream sequence
AAGTAACCTGAGGATGGGAAAGCTGTCTGGCTGGTGTTTTTAACCCTCTCCCTCCCCTCCCCCCATGTCAATATAATGGGTGTATGATGAATATTTGTTG
Downstream sequence
ttgggttaattaaaaagccttgttttcaagctctgaagttctttcttctacttgttagattttattttctgagactttcctgtgcattttgcatttcttt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate