Basic Information
VIS ID
TVIS10018817
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1797
Integrated sequence
TTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT| |GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT
Host Sequence
Chromosome
chr13
Cytoband
q22.1
Reference genome
GRCh37.55
Start
75321837/74747700 (Hg38)
End
75321837/74747700 (Hg38)
Fragile sites / regions
FRA13E
Nearest miRNA
hsa-mir-1297/Upstream/8529376; hsa-mir-1267/Downstream/2950312;
Nearest TSS
ENST00000623511/Upstream/191164; ENST00000434832/Downstream/502780;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/612019, chr13-CpG: 197/Downstream/733016
Nearby gene
LINC00347
Upstream sequence
ctttcaaaattctgcataattccttggccatgtaagataatattgacagattttggagattaggatgtggatatgtttggagaggcattatattgtctac
Downstream sequence
cacaTCTACTATAAAAGATGCATGGTATGTAACCAAAAGTTAAAGTGATGTCAACCATGTTGTTTTGGAATTTGAAGGCCAGAGAAAAAGAAAAATATTG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate