Basic Information
VIS ID
TVIS10018819
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1545
End
1766
Integrated sequence
ACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGT
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37.55
Start
96477685/95934456 (Hg38)
End
96477685/95934456 (Hg38)
Nearest miRNA
hsa-mir-10393/Upstream/3029981; hsa-mir-1302-10/Downstream/398805;
Nearest TSS
ENST00000557528/Upstream/295962; ENST00000560176/Downstream/56126;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/607363, chr15-CpG: 151/Downstream/387196
Nearby gene
NR2F2-AS1
Upstream sequence
CAAATCCTAAACCCAAGGGGAGGACAAATAGGTCCCTGGGGTCTGGGCTTTCAAACCATCAAGGAAGACAAGAGTTCTGCTGCAGCTCTGGGACAGCAGC
Downstream sequence
cctcccagttacaagtgatcctcccacctcagtttccaaagtagctaggactacacgtgtgcaccaccatgcctggctaaattttctgtttttgtagaga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate