ANKRD26P1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018820
Fusion event
HBV-ANKRD26P1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1815
Integrated sequence
ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC
Host Sequence
Chromosome
chr16
Cytoband
q11.2
Reference genome
GRCh37.55
Start
46577761/46543849 (Hg38)
End
46577761/46543849 (Hg38)
Location type
Intron11
Target gene
ANKRD26P1
Nearest miRNA
hsa-mir-1225/Upstream/12380176; hsa-mir-11401/Downstream/3748767;
Nearest TSS
ENST00000527434/Upstream/10756962; ENST00000569239/Downstream/40404;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/114875, chr16-CpG: 42/Downstream/77241
Upstream sequence
GACTTCTGCTCATGTTCTAATCAGCAAAATATTCCCTGAATCATACATCTTTTGGACTCCGGAAAAGTAACTGTACAAAGCTGTTTAGATCACTGACTTA
Downstream sequence
tctcacaccacatacaaaaattaactctaatttattaaggattcaaataaaagagctaaaaccgaagaaaactttggtgtaaaccttcaggagtttggat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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