MICAL3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018832
Fusion event
HBV-MICAL3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1760
Integrated sequence
AGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGT| |TAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCT
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37.55
Start
18453566/17970800 (Hg38)
End
18453566/17970800 (Hg38)
Location type
Intron31
Target gene
MICAL3
Nearest miRNA
hsa-mir-3198-1/Upstream/206541; hsa-let-7a-3/Downstream/10068;
Nearest TSS
ENST00000624155/Upstream/63926; ENST00000443243/Downstream/30380;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/128778, chr22-CpG: 145/Downstream/29625
Upstream sequence
TGGGGTTGGTGAGAAAAGGTGCTAAGTCTGTCTTTCCAAGCCATTTAATTGAGCAGCATTTTTTTTTAATGTGGAAAATTTTTTTATCTGTTACGTCTTT
Downstream sequence
CCTATTATATTTATCTTGTCCTTGATTTCAGCACCCCACCCGATTTGCAGGCAGTGCTTTCTAAACTGTGCCCTGTGAGCTGTTAAAAAGTCTTCTGGAg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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