Basic Information
VIS ID
TVIS10018834
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1807
Integrated sequence
CTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCA| |CCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGA
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37.55
Start
113705476/114471023 (Hg38)
End
113705476/114471023 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/1690235; hsa-mir-105-1/Downstream/168412;
Nearest TSS
ENST00000429181/Upstream/532805; ENST00000371951/Downstream/113055;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/80323, chrX-CpG: 34/Downstream/110599
Nearby gene
HTR2C
Upstream sequence
gttttaggatgagattaacatttacatcgatgactgaatgaagcagattgtccttgccaatgtggctggaccttgtccaatcagtcaaatgcctgaaaag
Downstream sequence
acctcttagtctaggtagatactttcactggataggtagaggcctttcctacagggtctgggaaggccaccacagtcatttcttcccttctgtcagacat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate