Basic Information
VIS ID
TVIS10018836
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
44
End
489
Integrated sequence
AGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTG
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37.55
Start
239371629/239208329 (Hg38)
End
239371629/239208329 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/1737138; hsa-mir-3123/Downstream/1923943;
Nearest TSS
ENST00000473358/Upstream/722306; ENST00000481779/Downstream/42489;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1424181, chr1-CpG: 91/Downstream/178626
Nearby gene
CHRM3
Upstream sequence
attatcatctaccttattgacttattagtgtcttaaataaattCAAATTCTTACAGTTTTGTTTATCTAGtgtgatggataatttctgtaaaaacttggc
Downstream sequence
taaatgacaaaaagtatgaaatggctgtgatgaaagatttgatgagagttcattataccacaactgacaaggatattcgattttttctgtggcagacaac
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate