Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018838
Fusion event
HBV-HIBCH integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1803
Integrated sequence
CATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG| |CGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCA
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
End
191154635/190289909 (Hg38)
Location type
Intron9
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1156798; hsa-mir-1244-1/Downstream/16493325;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/108806, chr2-CpG: 45/Downstream/29688
Upstream sequence
GTCTCTTTTGTGGCTAATAATCCTGCTTTGGGAGTAGATCTGATTTCTGAAAATCATTTTGTATCCAAAATAATGTAAGCCTGTAAAGGAAAAACCTGAT
Downstream sequence
ctttgttgcccaggctggagtgcagtggtgcaatctcgaatcactgcaacctccacctcccaggttcaagctgattctcctgcctcagcctcccgagtag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.