Basic Information
VIS ID
TVIS10018839
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
2635
Integrated sequence
ACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTG| |ATTATGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCC
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh37.55
Start
211136241/210271517 (Hg38)
End
211136241/210271517 (Hg38)
Nearest miRNA
hsa-mir-10b/Upstream/2516636; hsa-mir-1244-1/Downstream/2154746;
Nearest TSS
ENST00000437798/Upstream/46026; ENST00000433296/Downstream/32098;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/46065, chr2-CpG: 34/Downstream/204940
Nearby gene
MYL1
Upstream sequence
cagctactcagaaggctgagccactcagggaatgaatgcagcacctatgaacctttcttgaaaaagtttgttgacgatgaattatagccatgcaatataa
Downstream sequence
TAGGTTCAAtctaaagccatgtaaatttcaagggaaattaaatctatttctgattcagttatacattactcattgaaatattatttggtggaaaatgttt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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