Basic Information
VIS ID
TVIS10018840
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37.55
Start
164153584/164435796 (Hg38)
End
164153584/164435796 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/264240; hsa-mir-1224/Downstream/4116058;
Nearest TSS
ENST00000440867/Upstream/960729; ENST00000494915/Downstream/250280;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/431289, chr3-CpG: 23/Downstream/2944343
Nearby gene
MIR1263
Upstream sequence
TGAAAATTAATGTGTTGTATTTCTTAAGTATCCTATTTCCACTCACTTGTTCACATAATCTTTAAAAATCCTATTGTGTTCAAGTCTACTTTTCCCACAG
Downstream sequence
TCTAGCAGAAATAGTGTTTTAGTTAGCTAACAAGATGTACCTTATCAATGTTTAAAATGAATATTAATAATACATTAATACCTCACTACATAAAGAAACC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate