Basic Information
VIS ID
TVIS10018848
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1088
End
1777
Integrated sequence
GCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCT
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37.55
Start
58482076/57907942 (Hg38)
End
58482076/57907942 (Hg38)
Fragile sites / regions
FRA13B ; FRA13C
Nearest miRNA
hsa-mir-1297/Upstream/2733394; hsa-mir-1267/Downstream/3291856;
Nearest TSS
ENST00000623511/Upstream/272929; ENST00000615202/Downstream/257885;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/273146, chr13-CpG: 52/Downstream/2255584
Nearby gene
LINC02338
Upstream sequence
agttgtccttttgtctctccaggccccttcccagtttggagcgggtattaaagtcccaggattttcttataataGttggcatcgtgaacaggaccccaga
Downstream sequence
gatcaaacgatgagtcagggaggagtatctgcagagggaaccctgaggtgattggcatcaaccatgtggggtgaagttgcctggctgcttgacctttgtg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate