RRN3P2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018851
Fusion event
HBV-RRN3P2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1511
End
1613
Integrated sequence
CGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGA
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37.55
Start
29104373/29093052 (Hg38)
End
29104373/29093052 (Hg38)
Location type
Intron9
Target gene
RRN3P2
Nearest miRNA
hsa-mir-1225/Upstream/134391; hsa-mir-11401/Downstream/506127;
Nearest TSS
ENST00000527434/Upstream/102274; ENST00000620513/Downstream/46609;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/10540, chr16-CpG: 19/Downstream/48868
Upstream sequence
GGAAGGAGATTGATGTGCAGAGCAGCTCCCGCTCATCTGACTTTTCACGGTTCACTGGGAACAATTTCCAAATAGCAAACTCTCTGGCTTCTCTCTCTTT
Downstream sequence
ctttgttgcccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacctcccgggttcaagcagttctcctgcctcagcctcctgattagc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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