ATP9B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018852
Fusion event
HBV-ATP9B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1730
Integrated sequence
CACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAG| |ACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCAC
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37.55
Start
77090804/79330804 (Hg38)
End
77090806/79330806 (Hg38)
Location type
Intron17
Target gene
ATP9B
Nearest miRNA
hsa-mir-1-2/Upstream/6477422;
Nearest TSS
ENST00000575820/Upstream/23614; ENST00000588895/Downstream/5820;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2642, chr18-CpG: 16/Downstream/34870
Upstream sequence
TAAGTGAAAGCAGTCTAGAATTTTACTTTAGATAAAATCATACAATTCCATGTATTATTTTTGCCTTTGATTGCTCTCCCAGCACCCTCTTTCCCATTAC
Downstream sequence
TTTATAATAGAAATAGAAGGCATTATCAATCATTCACTATTCTGAAATAATACTTTATATGTAATCAAAGTTATATTTTAATGTATCTCTTTTGTAACAT
Target sequence
TG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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