Basic Information
VIS ID
TVIS10018858
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1619
End
1729
Integrated sequence
CCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAG
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37.55
Start
100638019/101302315 (Hg38)
End
100638019/101302315 (Hg38)
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/485750; hsa-mir-103a-1/Downstream/9211514;
Nearest TSS
ENST00000502646/Upstream/399049; ENST00000506058/Downstream/841762;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/398881, chr5-CpG: 26/Downstream/994131
Nearby gene
ST8SIA4
Upstream sequence
gtgcatttactttttgatcagcaattccacttacaggaattctccctgaagatacactaattcagtaacaatatgaaaatacatatatacaaggttattc
Downstream sequence
GGAGAGAAGTTAAAAGTGTTTTATAATCTGACCAAATGCCCCCAGATTTGTTCAATGCCAAAATTAAATGTAGCTGAAGTATAAACTCATTTGAGATTGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate