Basic Information
VIS ID
TVIS10018861
Fusion event
HBV-LOC105377873 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1823
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37.55
Start
82474355/81764638 (Hg38)
End
82474355/81764638 (Hg38)
Location type
Intronic
Target gene
LOC105377873
Nearest miRNA
hsa-mir-10398/Upstream/3225329; hsa-mir-1202/Downstream/8548104;
Nearest TSS
ENST00000381078/Upstream/11864; ENST00000535040/Downstream/49519;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/10550, chr6-CpG: 49/Downstream/482644
Nearby gene
TENT5A
Upstream sequence
GAGGACAAGGCAGAGGGATAAATTATAGCTCTCTAGGAAGGAGGAGCAAAAGATCGAAAGAGCTCTTAAGAAGACAAGACTTTTAGATGGGAACCACCGT
Downstream sequence
TAGAATTTTCCAAATTAATGTAATTCGGTATTACACAAAAATGAAAAGGCAGGCATTACAGGCAAGCTACATTGCGTAAAGTCACAATTCCAAAGTTTTA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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