Basic Information
VIS ID
TVIS10018872
Fusion event
HBV-RBM15-AS1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37.55
Start
110866323/110323701 (Hg38)
End
110866328/110323706 (Hg38)
Location type
Intron3
Target gene
RBM15-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/724734; hsa-mir-11399/Downstream/2138064;
Nearest TSS
ENST00000473358/Upstream/99871; ENST00000602849/Downstream/14800;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/100311, chr1-CpG: 18/Downstream/14066
Upstream sequence
aaacaggaatgattgattaaaccattattccattggtgcttaactcaaccttcaggccttctttcctccctggagattgggggttggggctgaagtccca
Downstream sequence
ctaaactgtaaatcaaataatcataagaaatatgaaattgtaattttgacaggtgcaataaagaaaagtcacattacatggccaaatgagagcctataat
Target sequence
atgca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate