Basic Information
VIS ID
TVIS10018875
Fusion event
HBV-LOC105371684 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1772
Integrated sequence
CTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTG| |TACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCC
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37.55
Start
202057551/202088423 (Hg38)
End
202057551/202088423 (Hg38)
Location type
Intronic
Target gene
LOC105371684
Nearest miRNA
hsa-mir-101-1/Upstream/85187; hsa-mir-1182/Downstream/3359879;
Nearest TSS
ENST00000473358/Upstream/74645; ENST00000367282/Downstream/34435;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/104972, chr1-CpG: 105/Downstream/55600
Nearby gene
GPR37L1
Upstream sequence
ATCTTCGTTCACGAGGTGGTCGCCTTTCTGGTCTTCTATCAATTATTTTCCCTTCACCCTGAAGTTGTTGATCAGGTCTTCTTCCAACTCGTCTTATTCC
Downstream sequence
accctttaatcatgctttggtgtttctgaagctgtcattctgaagctgtctagggcctgccagccaccagtcatcttattagcatatgctatggtctgaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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