SLC25A26 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018881
Fusion event
HBV-SLC25A26 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1773
Integrated sequence
TCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGT| |ACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCT
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37.55
Start
66144899/66159224 (Hg38)
End
66144906/66159231 (Hg38)
Location type
Intron1
Target gene
SLC25A26
miRNAs that regulate target gene
hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-3160-5p ; hsa-mir-4660 ; hsa-mir-342-3p ; hsa-mir-362-3p ; hsa-mir-329-3p
Nearest miRNA
hsa-let-7g/Upstream/5541354; hsa-mir-12124/Downstream/1066233;
Nearest TSS
ENST00000440867/Upstream/25614; ENST00000484768/Downstream/61781;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/119304, chr3-CpG: 56/Downstream/61419
Upstream sequence
ATTGTTTTCATTATTATTTTTAACTTACAACAACTGGAGTTTGGCTTGTCAAGAGTCGTGCAGAATTAAAGAGTCTGTCTTTCATGGGGACAAATCTTTC
Downstream sequence
CCTGTGCAAACCAGTGTTTTAATGTTATTTGTTCCTTCTAGGGAATGCTAGGCCTGACAATTACATGGAATTTCAACCCTAATGAAGAAAGGGGTGATAT
Target sequence
TGAAGGC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate