Basic Information
VIS ID
TVIS10018883
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1789
Integrated sequence
GACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGG| |CATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGG
Host Sequence
Chromosome
chr3
Cytoband
p12.1
Reference genome
GRCh37.55
Start
86437842/86388692 (Hg38)
End
86437842/86388692 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/1002900; hsa-mir-12124/Downstream/837497;
Nearest TSS
ENST00000440867/Upstream/121331; ENST00000460586/Downstream/93251;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1429006, chr3-CpG: 78/Downstream/601768
Nearby gene
VGLL3
Upstream sequence
TCAAAGATCAGAAAAGCCCCTAGAAGGTATCTAGTAGCTGCAGGTATCTGAAAGCCTTCACTATTTGTTCTGCAGGCAAAACATACAAACACACTCTAGC
Downstream sequence
cagccctttcagaagactccaagggaccacccacaaaggagttgttctggacagtccaggagaagctcagtatgggtttttgtgtcctctgcttcacctt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate