Basic Information
VIS ID
TVIS10018885
Fusion event
HBV-LOC105374220 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1760
Integrated sequence
AGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGT| |TAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCT
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37.55
Start
172860454/173142664 (Hg38)
End
172860454/173142664 (Hg38)
Location type
Intronic
Target gene
LOC105374220
Nearest miRNA
hsa-let-7g/Upstream/2035905; hsa-mir-1224/Downstream/2226876;
Nearest TSS
ENST00000440867/Upstream/1396; ENST00000447709/Downstream/11073;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/391609, chr3-CpG: 49/Downstream/252816
Nearby gene
SPATA16
Upstream sequence
AAATAGAAAAGAAAGTATTTTTTTTCCTTCAGAAGatatattaaaataacatttaaaaaaaataCCTACATATTTTGGAAAATTGCAGTCTATATAATAA
Downstream sequence
tagtcaactcagcggatcatttccacaccctggcatctactgatgtgttttttgtccctttagtgttatcttttccaaaggtcaaataaatggaattata
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate