Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018886
Fusion event
HBV-FAM157A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1787
Integrated sequence
ACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTA| |GGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTT
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
End
197894626/198167755 (Hg38)
Location type
Exon5
Target gene
Nearest miRNA
hsa-let-7g/Upstream/493177;
Nearest TSS
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/10272, None/Downstream
Upstream sequence
ggcggaggtgcagtgagccaagatcatgctactacattccagcctaggtgacacagcaagactctgtctcaaaaaaaaaaaaaaaaaTTTAGTCTTTGGT
Downstream sequence
CCAGAGGGCGCGCGATCCCGCCCCAACCAACTTCCCGCTGAGGTGCCAGAAGCAGCGAGGAGCTTCAGCTTCCTCAGGGCAGCACGAGGGTCGTGTTAAC
Target sequence
CA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.