Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018888
Fusion event
HBV-KCNIP4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1810
Integrated sequence
CAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
Start
End
20886931/20885308 (Hg38)
Location type
Intron7
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/356924; hsa-mir-12115/Downstream/579392;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/184595, chr4-CpG: 95/Downstream/1063154
Upstream sequence
attatggagaacattatggagattccttcaaaactaaaaatacaattaccctatgatttagcaatccctctagtgagtatttatcccttaaaacaggaaa
Downstream sequence
cctgcagataacatcactactgtagaacctaagattggctttttgagatgtcttttcaggtttttgcatttctgacaatgaatggcttcgcccagacctg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.