hsa-mir-6844 _LIHC.png
GALNTL6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018894
Fusion event
HBV-GALNTL6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1816
Integrated sequence
CTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCA| |TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37.55
Start
173768099/172846948 (Hg38)
End
173768120/172846969 (Hg38)
Location type
Intron7
Target gene
GALNTL6
miRNAs that regulate target gene
hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-12113/Upstream/1660656; hsa-mir-1305/Downstream/421191;
Nearest TSS
ENST00000502981/Upstream/37588; ENST00000502407/Downstream/321784;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1032981, chr4-CpG: 154/Downstream/321823
Upstream sequence
tagccaggcatggtggcgggcgcctgtagttccagctactcgggaagctgaggcaggagaatggcgtgaacccaggaggtggaccttgcagtgagccaaa
Downstream sequence
ctccctctccctttgtctctctGCATTGTTCCTGACATAGGTTTTTGAGGACTACACACTGAAAACTTGTCCATGAATATATGTCACAATCACCTTTTTA
Target sequence
gctctctttctctctcttcct
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate