Basic Information
VIS ID
TVIS10018902
Fusion event
HBV-LOC105378102 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1797
Integrated sequence
TTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT| |GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT
Host Sequence
Chromosome
chr6
Cytoband
q26
Reference genome
GRCh37.55
Start
164452839/164031807 (Hg38)
End
164452839/164031807 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA6E
Target gene
LOC105378102
Nearest miRNA
hsa-mir-10398/Upstream/5267054; hsa-mir-1913/Downstream/2477547;
Nearest TSS
ENST00000381078/Upstream/327903; ENST00000456118/Downstream/53854;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/59015, chr6-CpG: 28/Downstream/305205
Nearby gene
LOC102724152
Upstream sequence
AGTTGCACTTTATGCTCTTATTGTTTCTCCTAAAAGATATCATCCAAATGATATATTCTAAGAAACTTTAAGCTTTGAGAGGCCAAAAAAACAAATCTGT
Downstream sequence
gggaggggattggaccaggggcctggtttcagtttcggatggattaacaccctccgtcttggtataatgactgaattctcatgagatctccttgtttaaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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