Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018905
Fusion event
HBV-MYBL1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1706
Integrated sequence
CGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCAT| |ACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGC
Host Sequence
Chromosome
chr8
Cytoband
q13.1
Reference genome
Start
End
67520107/66607872 (Hg38)
Location type
Intron15
Target gene
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-221-3p ; hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-15a-5p ; hsa-mir-6512-5p ; hsa-mir-4693-3p ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-5192 ; hsa-mir-574-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4275 ; hsa-mir-6760-5p ; hsa-mir-4433b-3p ; hsa-mir-6873-5p ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-190a-3p ; hsa-mir-1304-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-1277-5p ; hsa-mir-3163 ; hsa-mir-548aw ; hsa-mir-1229-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3613-3p ; hsa-mir-455-5p ; hsa-mir-5000-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3065-5p ; hsa-mir-4795-3p ; hsa-mir-3162-5p ; hsa-mir-126-5p ; hsa-mir-7845-5p
Nearest miRNA
hsa-mir-124-1/Upstream/2228615; hsa-mir-10400/Downstream/7940671;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/65116, chr8-CpG: 122/Downstream/4500
Upstream sequence
aactcaaggaaaagagagttttagaaggtgggtgtgGggtcaggggcagtggctcgcgcctgtaatcccagcactttgggaggctgaggtgggcagatca
Downstream sequence
CCTCAGGCATGCTTTTCACAGGGTCTCTTTCTTTTCCTCCCTCTCTTCAGATCCTCAAAGTTTCCATAACAGTATATTTGAGACTGCTTTAAAATACAGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.