Basic Information
VIS ID
TVIS10018906
Fusion event
HBV-LOC101930053 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1768
Integrated sequence
TGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTC| |TTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCA
Host Sequence
Chromosome
chr9
Cytoband
p24.2
Reference genome
GRCh37.55
Start
2404577/2404577 (Hg38)
End
2404577/2404577 (Hg38)
Location type
Intronic
Target gene
LOC101930053
Nearest miRNA
hsa-mir-1302-9/Upstream/2374296; hsa-let-7a-1/Downstream/2445720;
Nearest TSS
ENST00000422679/Upstream/223006; ENST00000445631/Downstream/117442;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/162475, chr9-CpG: 219/Downstream/216731
Nearby gene
VLDLR-AS1
Upstream sequence
aagagagaggcttcagaagaaacaaaatcaccagcaccttgatctttgacttctaatctccagaatagtgagaaataaatttctgttgttaagccGTCca
Downstream sequence
agcaagaaaaaggaaataaaagaaagaaagaaagaaagaaagaaagaaaaagaaagagaaagaaagaaagCAAAACAACAAAATAATCATGGATGTTGAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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